Protein-Protein Interaction Search

Input an interacting protein pair as a query to search its homologous interactions across multiple species

Press the to obtain more information on that specific field.

 

Query protein pair (sequences in FASTA format or UniProt ID) :
 Input sequences in FASTA format 
Interacting partner 1:
Interacting partner 2:
 Input UniProt accession numbers (Ex: AP1S1_MOUSE)
  Interacting partner 1:              Interacting partner 2:  
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Options:
@ E-value cut-off threshold for homolog searching   
@ 10 10-1 10-10 (Default) Other:  (Ex: -50 = 10-50)
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@ Joint E-value  
@ 10-100 10-40 (Default) 10-10 Other:  (Ex: -50 = 10-50)
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@ Number of homologous interactions in each species ( Ranking by Joint E-value )  
@ Best-match Three All (Default) Other: 
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@ The conservation ratio (CRD) of a domain-domain pair   
@ 1.00 All 0.60 (Default) Other:  (Input Range: 0.01 ~ 0.99)
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@ The conservation ratio (CRF) of a molecular function term pair   
@ 1.00 All 0.60 (Default) Other:  (Input Range: 0.01 ~ 0.99)
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@ Choose output species  
 
Homo sapiens Caenorhabditis elegans Others (Taxonomy ID) Ex: 9913;9598;...
      
Drosophila melanogaster Arabidopsis thaliana
Saccharomyces cerevisiae Mus musculus
Rattus norvegicus All (Default)
   

Last updated 2009/04/11